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Bug Fix Advisory openmpi bug fix and enhancement update

Advisory: RHBA-2008:0925-8
Type: Bug Fix Advisory
Severity: N/A
Issued on: 2008-10-06
Last updated on: 2008-10-06
Affected Products: Red Hat Desktop (v. 4)
Red Hat Enterprise Linux AS (v. 4)
Red Hat Enterprise Linux AS (v. 4.7.z)
Red Hat Enterprise Linux ES (v. 4)
Red Hat Enterprise Linux ES (v. 4.7.z)
Red Hat Enterprise Linux WS (v. 4)

Details

Updated openmpi and openmpi11 packages that fix several bugs and add an
enhancement are now available.

Open MPI (Open Message Passing Interface) is a software stack used for
cluster communications in High-Performance Computing (HPC) clusters.

These updated openmpi packages provide the following enhancement:

The openmpi-1.2.3 and later packages break binary ABI (Application Binary
Interface) compatibility with programs compiled against the openmpi-1.1.1
package provided as a part of Red Hat Enterprise Linux 4 Update 5. To solve
this issue, a new package, openmpi11, has been added to the distribution.
This new package provides an ABI-compatible set of libraries so that
programs compiled against openmpi-1.1.1 can continue to work, unchanged.

The mpi-selector package was added to Red Hat Enterprise Linux 4 as part of
Update 7. The mpi-selector command line utility allows users to select the
appropriate MPI stack for their needs, whether the compatible
openmpi-1.1-series stack, the current openmpi-1.2-series stack, or possible
future stacks.

Please see the mpi-selector(1) man page for instructions on how to set the
system-wide and/or per-user default MPI stack to use. Also note that Red
Hat no longer supports any other method of selecting which MPI stack to
use. Notably, the alternatives command line utility can no longer be used
to switch between MPI stacks.

Note: due to the volatility of the upstream Open MPI software stack, as
well as the rest of the upstream OFED (Open Fabrics Enterprise
Distribution) stack, Red Hat does not guarantee ABI compatibility across
minor releases (a.k.a. point releases) of Open MPI. These new openmpi11
packages are being provided as a one-time exception and convenience to our
customers.

As such, we strongly encourage customers to implement their Open MPI
infrastructure in such a way as to make recompiling applications which use
openmpi an easy task in the event that future updates cause further ABI
incompatibilies. The Red Hat Enterprise Linux Update 7 release notes
contain a complete list of packages in the OFED stack which Red Hat exempts
from any ABI guarantees. A link to the Red Hat Enterprise Linux Update 7
release notes is provided in the "References" section of this errata.

In addition to the enhancement detailed above, these updated openmpi
packages provide fixes for the following bugs:

* The openmpi-1.2.3 and openmpi-1.2.5 packages both experienced problems
with using the alternatives tool to select an appropriate MPI stack. In
these updated packages, the usage of the alternatives utility to select the
MPI stack has been removed in favor of the mpi-selector command line tool,
as detailed above.

* The openmpi-1.2-series package (i.e. the package named simply "openmpi")
has been updated to upstream version 1.2.7. For a complete list of changes
and bug fixes included in the Open MPI 1.2-series releases, see
http://svn.open-mpi.org/svn/ompi/branches/v1.2/NEWS

Important: when upgrading from openmpi-1.2.5 to openmpi-1.2.7, the
openmpi-1.2.5 uninstall scripts will display several error messages.
However, these errors are non-fatal and the openmpi-1.2.7 package will
automatically compensate for the errors, which may safely be ignored.

* The openmpi-1.1-series package (i.e. the package named "openmpi11") has
been updated to upstream version 1.1.5. For a complete list of changes and
bug fixes included in the Open MPI 1.1-series releases, see
http://svn.open-mpi.org/svn/ompi/branches/v1.1/NEWS

Users are advised to upgrade to these updated openmpi packages, which
resolve these issues and add this enhancement.


Solution

Before applying this update, make sure that all previously-released
errata relevant to your system have been applied.

This update is available via Red Hat Network. Details on how to use
the Red Hat Network to apply this update are available at
http://kbase.redhat.com/faq/FAQ_58_10188

Updated packages

Red Hat Desktop (v. 4)

SRPMS:
openmpi-1.2.7-2.el4_7.src.rpm
File outdated by:  RHEA-2009:1023
    MD5: 6d017e38326ecba667bfacb2b36028d9
openmpi11-1.1.5-1.el4_7.src.rpm
File outdated by:  RHEA-2009:1023
    MD5: 37ee433208fd967cb3c7c0dc18660cfb
 
IA-32:
openmpi-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 37853d4c8e8b517ec0b611ccc5d26838
openmpi-devel-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 8db138a13f5969da20a22bff1d62a6c0
openmpi-libs-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 074cd0437bcfc035de6544e72084adb0
openmpi11-1.1.5-1.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: bccb1aa2a706630ade9467ae8cace0cc
 
x86_64:
openmpi-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 37853d4c8e8b517ec0b611ccc5d26838
openmpi-1.2.7-2.el4_7.x86_64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 96f6bb922db105ec5f1c0f5763c96c2c
openmpi-devel-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 8db138a13f5969da20a22bff1d62a6c0
openmpi-devel-1.2.7-2.el4_7.x86_64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 1dc6d49cd53b548eb019027280d3958a
openmpi-libs-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 074cd0437bcfc035de6544e72084adb0
openmpi-libs-1.2.7-2.el4_7.x86_64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 83cc47ca42c7f86a22bd5f5195ca57ef
openmpi11-1.1.5-1.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: bccb1aa2a706630ade9467ae8cace0cc
openmpi11-1.1.5-1.el4_7.x86_64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 87d4078b41302aad7ea932a118e828e3
 
Red Hat Enterprise Linux AS (v. 4)

SRPMS:
openmpi-1.2.7-2.el4_7.src.rpm
File outdated by:  RHEA-2009:1023
    MD5: 6d017e38326ecba667bfacb2b36028d9
openmpi11-1.1.5-1.el4_7.src.rpm
File outdated by:  RHEA-2009:1023
    MD5: 37ee433208fd967cb3c7c0dc18660cfb
 
IA-32:
openmpi-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 37853d4c8e8b517ec0b611ccc5d26838
openmpi-devel-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 8db138a13f5969da20a22bff1d62a6c0
openmpi-libs-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 074cd0437bcfc035de6544e72084adb0
openmpi11-1.1.5-1.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: bccb1aa2a706630ade9467ae8cace0cc
 
IA-64:
openmpi-1.2.7-2.el4_7.ia64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 33cc9d76dc512c01c0f4ae0468e9fddf
openmpi-devel-1.2.7-2.el4_7.ia64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 1d12edc35da8b1459454ea5e34ea1295
openmpi-libs-1.2.7-2.el4_7.ia64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 2ad89abbcc0e016ea6e2166d5762dc52
openmpi11-1.1.5-1.el4_7.ia64.rpm
File outdated by:  RHEA-2009:1023
    MD5: fc81f86ed30c26b5ecbfe3d41314d716
 
PPC:
openmpi-1.2.7-2.el4_7.ppc.rpm
File outdated by:  RHEA-2009:1023
    MD5: 0c96c4a99e73969eb78a7d8ec16351ee
openmpi-1.2.7-2.el4_7.ppc64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 3d4895804e2e93ab9fc670c0ffcb62bc
openmpi-devel-1.2.7-2.el4_7.ppc.rpm
File outdated by:  RHEA-2009:1023
    MD5: 42b97213b482370a2ea07437e6b07c9f
openmpi-devel-1.2.7-2.el4_7.ppc64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 2407f8b3154081b2ecffe05411aea46c
openmpi-libs-1.2.7-2.el4_7.ppc.rpm
File outdated by:  RHEA-2009:1023
    MD5: 497e96ec869e02f7b1bf23155c670103
openmpi-libs-1.2.7-2.el4_7.ppc64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 8c7c0cc6ab5f770bb803a8d31fa8546a
openmpi11-1.1.5-1.el4_7.ppc.rpm
File outdated by:  RHEA-2009:1023
    MD5: f1aa9dd16c23f568dbfba28019e8399d
openmpi11-1.1.5-1.el4_7.ppc64.rpm
File outdated by:  RHEA-2009:1023
    MD5: a1d86ce47171a50630b881438568f516
 
x86_64:
openmpi-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 37853d4c8e8b517ec0b611ccc5d26838
openmpi-1.2.7-2.el4_7.x86_64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 96f6bb922db105ec5f1c0f5763c96c2c
openmpi-devel-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 8db138a13f5969da20a22bff1d62a6c0
openmpi-devel-1.2.7-2.el4_7.x86_64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 1dc6d49cd53b548eb019027280d3958a
openmpi-libs-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 074cd0437bcfc035de6544e72084adb0
openmpi-libs-1.2.7-2.el4_7.x86_64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 83cc47ca42c7f86a22bd5f5195ca57ef
openmpi11-1.1.5-1.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: bccb1aa2a706630ade9467ae8cace0cc
openmpi11-1.1.5-1.el4_7.x86_64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 87d4078b41302aad7ea932a118e828e3
 
Red Hat Enterprise Linux AS (v. 4.7.z)

SRPMS:
openmpi-1.2.7-2.el4_7.src.rpm
File outdated by:  RHEA-2009:1023
    MD5: 6d017e38326ecba667bfacb2b36028d9
openmpi11-1.1.5-1.el4_7.src.rpm
File outdated by:  RHEA-2009:1023
    MD5: 37ee433208fd967cb3c7c0dc18660cfb
 
IA-32:
openmpi-1.2.7-2.el4_7.i386.rpm     MD5: 37853d4c8e8b517ec0b611ccc5d26838
openmpi-devel-1.2.7-2.el4_7.i386.rpm     MD5: 8db138a13f5969da20a22bff1d62a6c0
openmpi-libs-1.2.7-2.el4_7.i386.rpm     MD5: 074cd0437bcfc035de6544e72084adb0
openmpi11-1.1.5-1.el4_7.i386.rpm     MD5: bccb1aa2a706630ade9467ae8cace0cc
 
IA-64:
openmpi-1.2.7-2.el4_7.ia64.rpm     MD5: 33cc9d76dc512c01c0f4ae0468e9fddf
openmpi-devel-1.2.7-2.el4_7.ia64.rpm     MD5: 1d12edc35da8b1459454ea5e34ea1295
openmpi-libs-1.2.7-2.el4_7.ia64.rpm     MD5: 2ad89abbcc0e016ea6e2166d5762dc52
openmpi11-1.1.5-1.el4_7.ia64.rpm     MD5: fc81f86ed30c26b5ecbfe3d41314d716
 
PPC:
openmpi-1.2.7-2.el4_7.ppc.rpm     MD5: 0c96c4a99e73969eb78a7d8ec16351ee
openmpi-1.2.7-2.el4_7.ppc64.rpm     MD5: 3d4895804e2e93ab9fc670c0ffcb62bc
openmpi-devel-1.2.7-2.el4_7.ppc.rpm     MD5: 42b97213b482370a2ea07437e6b07c9f
openmpi-devel-1.2.7-2.el4_7.ppc64.rpm     MD5: 2407f8b3154081b2ecffe05411aea46c
openmpi-libs-1.2.7-2.el4_7.ppc.rpm     MD5: 497e96ec869e02f7b1bf23155c670103
openmpi-libs-1.2.7-2.el4_7.ppc64.rpm     MD5: 8c7c0cc6ab5f770bb803a8d31fa8546a
openmpi11-1.1.5-1.el4_7.ppc.rpm     MD5: f1aa9dd16c23f568dbfba28019e8399d
openmpi11-1.1.5-1.el4_7.ppc64.rpm     MD5: a1d86ce47171a50630b881438568f516
 
x86_64:
openmpi-1.2.7-2.el4_7.i386.rpm     MD5: 37853d4c8e8b517ec0b611ccc5d26838
openmpi-1.2.7-2.el4_7.x86_64.rpm     MD5: 96f6bb922db105ec5f1c0f5763c96c2c
openmpi-devel-1.2.7-2.el4_7.i386.rpm     MD5: 8db138a13f5969da20a22bff1d62a6c0
openmpi-devel-1.2.7-2.el4_7.x86_64.rpm     MD5: 1dc6d49cd53b548eb019027280d3958a
openmpi-libs-1.2.7-2.el4_7.i386.rpm     MD5: 074cd0437bcfc035de6544e72084adb0
openmpi-libs-1.2.7-2.el4_7.x86_64.rpm     MD5: 83cc47ca42c7f86a22bd5f5195ca57ef
openmpi11-1.1.5-1.el4_7.i386.rpm     MD5: bccb1aa2a706630ade9467ae8cace0cc
openmpi11-1.1.5-1.el4_7.x86_64.rpm     MD5: 87d4078b41302aad7ea932a118e828e3
 
Red Hat Enterprise Linux ES (v. 4)

SRPMS:
openmpi-1.2.7-2.el4_7.src.rpm
File outdated by:  RHEA-2009:1023
    MD5: 6d017e38326ecba667bfacb2b36028d9
openmpi11-1.1.5-1.el4_7.src.rpm
File outdated by:  RHEA-2009:1023
    MD5: 37ee433208fd967cb3c7c0dc18660cfb
 
IA-32:
openmpi-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 37853d4c8e8b517ec0b611ccc5d26838
openmpi-devel-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 8db138a13f5969da20a22bff1d62a6c0
openmpi-libs-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 074cd0437bcfc035de6544e72084adb0
openmpi11-1.1.5-1.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: bccb1aa2a706630ade9467ae8cace0cc
 
IA-64:
openmpi-1.2.7-2.el4_7.ia64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 33cc9d76dc512c01c0f4ae0468e9fddf
openmpi-devel-1.2.7-2.el4_7.ia64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 1d12edc35da8b1459454ea5e34ea1295
openmpi-libs-1.2.7-2.el4_7.ia64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 2ad89abbcc0e016ea6e2166d5762dc52
openmpi11-1.1.5-1.el4_7.ia64.rpm
File outdated by:  RHEA-2009:1023
    MD5: fc81f86ed30c26b5ecbfe3d41314d716
 
x86_64:
openmpi-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 37853d4c8e8b517ec0b611ccc5d26838
openmpi-1.2.7-2.el4_7.x86_64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 96f6bb922db105ec5f1c0f5763c96c2c
openmpi-devel-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 8db138a13f5969da20a22bff1d62a6c0
openmpi-devel-1.2.7-2.el4_7.x86_64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 1dc6d49cd53b548eb019027280d3958a
openmpi-libs-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 074cd0437bcfc035de6544e72084adb0
openmpi-libs-1.2.7-2.el4_7.x86_64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 83cc47ca42c7f86a22bd5f5195ca57ef
openmpi11-1.1.5-1.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: bccb1aa2a706630ade9467ae8cace0cc
openmpi11-1.1.5-1.el4_7.x86_64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 87d4078b41302aad7ea932a118e828e3
 
Red Hat Enterprise Linux ES (v. 4.7.z)

SRPMS:
openmpi-1.2.7-2.el4_7.src.rpm
File outdated by:  RHEA-2009:1023
    MD5: 6d017e38326ecba667bfacb2b36028d9
openmpi11-1.1.5-1.el4_7.src.rpm
File outdated by:  RHEA-2009:1023
    MD5: 37ee433208fd967cb3c7c0dc18660cfb
 
IA-32:
openmpi-1.2.7-2.el4_7.i386.rpm     MD5: 37853d4c8e8b517ec0b611ccc5d26838
openmpi-devel-1.2.7-2.el4_7.i386.rpm     MD5: 8db138a13f5969da20a22bff1d62a6c0
openmpi-libs-1.2.7-2.el4_7.i386.rpm     MD5: 074cd0437bcfc035de6544e72084adb0
openmpi11-1.1.5-1.el4_7.i386.rpm     MD5: bccb1aa2a706630ade9467ae8cace0cc
 
IA-64:
openmpi-1.2.7-2.el4_7.ia64.rpm     MD5: 33cc9d76dc512c01c0f4ae0468e9fddf
openmpi-devel-1.2.7-2.el4_7.ia64.rpm     MD5: 1d12edc35da8b1459454ea5e34ea1295
openmpi-libs-1.2.7-2.el4_7.ia64.rpm     MD5: 2ad89abbcc0e016ea6e2166d5762dc52
openmpi11-1.1.5-1.el4_7.ia64.rpm     MD5: fc81f86ed30c26b5ecbfe3d41314d716
 
x86_64:
openmpi-1.2.7-2.el4_7.i386.rpm     MD5: 37853d4c8e8b517ec0b611ccc5d26838
openmpi-1.2.7-2.el4_7.x86_64.rpm     MD5: 96f6bb922db105ec5f1c0f5763c96c2c
openmpi-devel-1.2.7-2.el4_7.i386.rpm     MD5: 8db138a13f5969da20a22bff1d62a6c0
openmpi-devel-1.2.7-2.el4_7.x86_64.rpm     MD5: 1dc6d49cd53b548eb019027280d3958a
openmpi-libs-1.2.7-2.el4_7.i386.rpm     MD5: 074cd0437bcfc035de6544e72084adb0
openmpi-libs-1.2.7-2.el4_7.x86_64.rpm     MD5: 83cc47ca42c7f86a22bd5f5195ca57ef
openmpi11-1.1.5-1.el4_7.i386.rpm     MD5: bccb1aa2a706630ade9467ae8cace0cc
openmpi11-1.1.5-1.el4_7.x86_64.rpm     MD5: 87d4078b41302aad7ea932a118e828e3
 
Red Hat Enterprise Linux WS (v. 4)

SRPMS:
openmpi-1.2.7-2.el4_7.src.rpm
File outdated by:  RHEA-2009:1023
    MD5: 6d017e38326ecba667bfacb2b36028d9
openmpi11-1.1.5-1.el4_7.src.rpm
File outdated by:  RHEA-2009:1023
    MD5: 37ee433208fd967cb3c7c0dc18660cfb
 
IA-32:
openmpi-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 37853d4c8e8b517ec0b611ccc5d26838
openmpi-devel-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 8db138a13f5969da20a22bff1d62a6c0
openmpi-libs-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 074cd0437bcfc035de6544e72084adb0
openmpi11-1.1.5-1.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: bccb1aa2a706630ade9467ae8cace0cc
 
IA-64:
openmpi-1.2.7-2.el4_7.ia64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 33cc9d76dc512c01c0f4ae0468e9fddf
openmpi-devel-1.2.7-2.el4_7.ia64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 1d12edc35da8b1459454ea5e34ea1295
openmpi-libs-1.2.7-2.el4_7.ia64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 2ad89abbcc0e016ea6e2166d5762dc52
openmpi11-1.1.5-1.el4_7.ia64.rpm
File outdated by:  RHEA-2009:1023
    MD5: fc81f86ed30c26b5ecbfe3d41314d716
 
x86_64:
openmpi-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 37853d4c8e8b517ec0b611ccc5d26838
openmpi-1.2.7-2.el4_7.x86_64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 96f6bb922db105ec5f1c0f5763c96c2c
openmpi-devel-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 8db138a13f5969da20a22bff1d62a6c0
openmpi-devel-1.2.7-2.el4_7.x86_64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 1dc6d49cd53b548eb019027280d3958a
openmpi-libs-1.2.7-2.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: 074cd0437bcfc035de6544e72084adb0
openmpi-libs-1.2.7-2.el4_7.x86_64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 83cc47ca42c7f86a22bd5f5195ca57ef
openmpi11-1.1.5-1.el4_7.i386.rpm
File outdated by:  RHEA-2009:1023
    MD5: bccb1aa2a706630ade9467ae8cace0cc
openmpi11-1.1.5-1.el4_7.x86_64.rpm
File outdated by:  RHEA-2009:1023
    MD5: 87d4078b41302aad7ea932a118e828e3
 
(The unlinked packages above are only available from the Red Hat Network)

Bugs fixed (see bugzilla for more information)

463195 - openmpi 1.2.3 rebase breaks ABI
463441 - openmpi-libs update error
463442 - mpirun is MIA on openmpi rpms
463443 - openmpi-libs %pre-un numerical evaluation on two string


References


Keywords

Infiniband, iWARP, OFED, OpenIB, openmpi, openmpi11


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